Showing 31 results for Gene
Monireh Marsafari, Habibollah Samizadeh Lahiji, Babak Rabiei, Ali Ashraf Mehrabi, Yongkun Lv, Peng Xu,
Volume 7, Issue 2 (7-2020)
Abstract
Yarrowia lipolytica, as a good cell factory to speed up the production of plant pharmaceutical components, has been considered to be one of the most important and attractive micro-organisms in recent years, due to its high secretion capacity, limited glycosylation, large range of genetic markers and molecular tools. Naringenin, as a central core of flavonoids production, plays important roles both in plants and in the treatment of different types of human diseases. For this purpose, specific naringenin biosynthesis genes from different origins were selected and introduced after comparative expression profiling in
Y. lipolytica. This research indicated that
chs plays the main role in the production of naringenin, so the increase copy number of this gene
in each construct was investigated. The HPLC results confirmed that the construct with 5 copy numbers of
chs resulted in 7.14 fold increase of naringenin extracellular titer to 90.16 mg/L in shake flask cultures. The results reported in this study demonstrated that sufficient knowledge of genes involved in the specific biosynthesis pathway, synthetic gene pathway and using
Y. lipolytica as a capable and cheap host could help bioengineers to produce significant amounts of pharmaceutical components.
Zohreh Khalili, Shahrokh Kazempour-Osaloo, Ali Asghar Maassoumi,
Volume 7, Issue 2 (7-2020)
Abstract
In this study, phylogenetic relationships and evolutionary trends of morphological characters of Astragalus sects. Acanthophace and Aegacantha were studied using nrDNA ITS and rpl32-trnLUAG datasets while Astragalus stocksii was selected as the outgroup. The phylogenetic results indicated the non-monophyly of A. sect. Acanthophace in its current circumscription due to the distant exclusion of A. ovigerus from the core group, and incongruence between nuclear and plastid datasets on the basis of different position of latter species in the resulted phylogenetic trees. Astragalus sect. Aegacantha was also found to not being monophyletic due to the distant position of A. montis-parrowii from the other representatives of the section while accompanying with other spiny Astragalus species. The Optimization of 32 morphological characters on the Bayesian combined tree indicated that some characters were most useful for delimitation of taxa in sections Acanthophace and Aegacantha. The results obtained from the evolution of characters showed that standard blade constriction, legume shape and possessing unilocular pods were of diagnostic importance for the separation of A. ovigerus from other species. The traced characters were in accordance with the phylogenetic position of A. montis-parrowii, which was separated from other members of sect. Aegacantha, as the number of flowers in inflorescences, the presence of peduncle, hairy petal, pandurate standard and constriction of standard that is differentiatiated to claw, the presence of claw in standard and the length difference between keel and wing were different from those in other members of the sect. Aegacantha.
Iman Alinezhadi, Nastaran Heidari, Hossein Javanbakht,
Volume 7, Issue 3 (11-2020)
Abstract
Sexual dimorphism in the ratio of digits length is a morphological feature resulted from the interaction between sex hormones and prenatal Hox genes, the latter is known to control the development of both limbs and genitals. The status of this trend and ratios have been investigated in various animal groups, including humans, other mammals, birds, reptiles, and amphibians. In this study, the body length and sexual dimorphism in the second-to-fourth, second-to-third and third-to-fourth digit lengths ratios (i.e., 2D:3D, 2D:4D, 3D:4D) of left fore and hind limbs were investigated in 54 specimens of toads collected from the northern Iran, including Bufo viridis (16 males and 19 females) and Pelobates syriacus (10 males and 9 females). In addition, the body length of the studied specimens were recorded. The results showed that the average body length (SVL) of female individuals of Pelobates syriacus was higher than those in males, which was found to be statistically significant (P≤0.05). Meanwhile, the average body length (SVL) of female individuals of Bufo viridis was found to be higher than those in males, however, the difference was not statistically significant. No sexual dimorphism was detected in the second-to-fourth, second-to-third and third-to-fourth digit lengths ratios of left fore and hind limbs between the male and female undividuals of Bufo viridis. However, the second-to-fourth digit ratio (2D:4D) in Pelobates syriacus species were found to be significantly different (P=0.040) between the male and female individuals, as the ratio was higher in males than females. Therefore, it could be concluded that the sexual dimorphism in 2D:4D of Pelobates syriacus species is consistent with those in most amphibians and diapsids.
Farhad Mashayekhi, Somaye Shabani, Soheila Talesh Sasani, Prof Zivar Salehi,
Volume 7, Issue 4 (12-2020)
Abstract
Olig1 and Olig2, two transcription factors, play regulatory function in the differentiation and specification of oligodendrocyte progenitor cells (OPCs). In this study the effects of electromagnetic fields (EMF) on total protein concentration ( TPC ) and Olig1 and Olig2 expression in the cerebral cortex of mouse was examined. Twenty-one Balb/c mice were separated into three groups: control, EMF and Sham groups (n=7 for each group). The mice were placed inside the solenoid for a daily EMF exposure of 50 Hz, 1 mT for 6 h/day, 7 days/week for 10 days. The Sham group was also located in the same coil with no exposure. Mice were anesthetized after the final exposure session and their cerebral cortex were collected. TPC and the expression of Olig 1 and Olig2 were studied by Bio-Rad protein assay and western blot, respectively. The cerebral cortex samples were removed for further analysis. There was no significant difference in TPC in the EMF treated cortical samples as compared with those from the SHAM and control groups. It was also shown that the expression of Olig1 and Olig2 was increased in the EMF treated cortical extracts as compared with those in controls and SHAM groups. Therefore, it could be concluded that EMF enhances Olig1 and Olig2 expression in the mice cerebral cortex. Moreover, as Olig1 and Olig2 plays important role in the development of oligodendrocyte progenitor cells, it can be deduced that EMF may affect OPC differentiation by increasing the expression of Olig1 and Olig2. Further studies are needed to clarify the extent of EMF impact on oligodendrocyte differentiation.
Fatemeh Kaboudan, Soheila Talesh Sasani, Seyed Mohsen Asghari,
Volume 8, Issue 1 (6-2021)
Abstract
Breast cancer is the fourth common cancer worldwide and occurs when breast cells begin to uncontrolled division and tumor formation. Angiogenesis is one of the essential factors in cell growth and maintenance of homeostasis in the natural and pathological conditions, while VEGFs are the most critical factors in angiogenesis. MiR-210 plays an important role in the angiogenesis via association with VEGF. Here, the miR-210 expression changes in response to a VEGFB antagonist peptide, called VEGB1, was studied in female BALB/c mice bearing 4T1 cell line induced breast tumor. The treated group received 1mg.kg-1 and 10mg.kg-1 of the peptide and the control group received PBS intraperitoneally during two weeks. Both of the animal groups underwent a resection of breast tissue 14 days after treatment and miR-210 expression level was investigated. Statistical analysis by On-way ANOVA showed that the expression level of miR-210 gene had significant differences among the groups treated with various doses of VEGB1. Also, the gene expression was significantly different between peptide-treated groups and control samples (p<0.05). MiR-210 expression level had 42% reduction in mice treated with 1mg.kg-1 of VEGB1, while 90% was seen in mice treated with 10mg.kg-1 of VEGB1 showing the inhibitory function of VEGB1 antagonist peptide at different doses.
Nastaran Heidari,
Volume 8, Issue 1 (6-2021)
Abstract
Finger length ratios are organized during embryonic development of fingers as they exposed to sex steroid hormones, and may show varying degrees of sexual dimorphism between males and females in different animal groups. Among all the finger length ratios calculated in a sample, the ratio between the second to fourth fingers (2D: 4D) is the most important one. In this study, the 2D:4D ratios in both sides of the body (right and left) in all limbs were investigated to determine if sexual dimorphism is present in the 2D: 4D ratios in 44 specimens studied (20 males and 24 females) of Acanthodactylus blanfordi. Other morphological traits of the two sexes were also examined (23 metric and meristic traits), as a result, sexual dimorphism was observed in five metric and meristic morphological traits. In terms of the ratio of the size of the fingers and toes, sexual dimorphism in the length of the fingers was observed only in 2D: 4D on the right side of the body in forelimbs and hindlimbs. The value of this trait was higher in males than females and this difference was statistically significant P ≤0.05).
Azadeh Akhavan Roofigar, Ali Bagheri,
Volume 8, Issue 1 (6-2021)
Abstract
Golestankooh, with an area of 130000 ha, is located in Isfahan Province. The present study was carried out in order to identification of flora of the aforementioned region, as a result, 620 taxa in total, belonging to 61 families and 303 genera, were identified. Asteraceae, represented by 104 species, was the largest family, following with Fabaceae, Lamiaceae and Brassicaceae with 63, 60 and 59 species, respectively. Astragalus, with 33 species, was the most diverse among the genera studied. Hemicryptophytes with 41% and therophytes with 34% are dominant life forms in the region. With regard to geographical distribution, 300 species (48%) were found to be Irano-Turanian elements. Moreover, 130 species, 21% of the identified plant taxa from the region, were found to be endemic to the flora of Iran. Due to high species diversity in the Golestankooh area, it seems necessary to use appropriate strategies for their conservation.
Mahdis Meraji Masouleh Moghaddam, Farhad Mashayekhi, Ziba Zahiri, Akram Eidi,
Volume 8, Issue 4 (12-2021)
Abstract
This study aimed to investigate the polymorphism of matrix metalloproteinase -3 (MMP-3) gene and its expression in the serum of infertile female patients received in vitro fertilization and embryo transfer (IVF-ET). To do so, 100 women with unsuccessful IVF-ET (IVF–) and 100 women with successful IVF-ET procedure and clinical pregnancy (IVF+) were included. Genetic polymorphism and serum concentration of MMP3 were investigated by ARMS-PCR and ELISA, respectively. The results showed no significant association between MMP-3 gene polymorphism and IVF-ET outcome among the two groups studied. However, a significant decrease in the concentration of MMP-3 serum in the IVF– group was observed in comparison with the IVF+ group (P=0.000002). Moreover, we showed that the serum MMP-3 levels in CC, AC and AA genotypes in the IVF– group were 33, 65.33 and 86 ng/ml, respectively. In conclusion, while there is no significant difference between MMP-3 promoter polymorphism and IVF-ET outcome between the IVF+ and IVF- groups, a significant decrease in MMP-3 serum levels in IVF- group was seen as compared with the IVF+ group. It could be also suggested that the CC genotype is associated with a decreased level of MMP-3 serum concentration and may be associated with IVF-ET failure.
Maede Parishan, Mahmoud Nateghi,
Volume 9, Issue 4 (12-2022)
Abstract
This study aimed to identify PGP and MRPA genes in clinical isolates of Leishmania. The genes of pgpa (MRPA) and mdr1 (PGP) are involved in the drug resistance, their products act as dependent transporters of ATP (ABC Transporter) in the reflux of drugs from the cytosol to the outer space of the cell. Hence, 40 volunteers with leishmaniasis were randomly selected. Firstly, Amastigotes were examined under a light microscope, then inoculated into NNN-specific biphasic culture medium. Deoxy ribonucleic acids were extracted by phenol-chloroform method and were determined by ITS-specific primers. Then the frequency of two pumps involved in "drug resistance" was investigated by PCR. In this study, the mdr1 gene, which had previously been shown to be present in the in vitro resistant strains, was shown to have a higher frequency of pgpas, which could be due to the presence of MDR. It transports the drug from the inner layers of the lipid bilayer membrane to the outer layers, reducing the concentration of the drug inside the cell and causing drug resistance, while the MRPA pump is in the membrane of the cell organelles.
Leila Gholami, Farnoosh Attari, Mahmood Talkhabi, Fatemeh Saadatpour,
Volume 10, Issue 1 (6-2023)
Abstract
Breast cancer is the most common cause of death from cancer among women. The triple-negative breast cancer (TNBC) is the most invasive subtype, and chemotherapy is the only therapy option. Cancer cells preferably utilize the glycolysis pathway even with proper oxygen availability, and this activation plays a great role in tumorigenesis. Therefore, glycolysis targeting can be an effective strategy for cancer treatment. Here, the apoptotic effect of a glycolysis inhibitor named dichloroacetate (DCA) on TNBC cells MDA-MB-231 was assessed, and the expression of anti-apoptotic genes and oncogenic miRNAs was evaluated. MTT assay showed that DCA reduces cell viability in a dose-dependent manner with the IC50 concentration of 50 mM. Annexin/PI assay demonstrated that DCA due to DCA treatment. Finally, the expression of anti-apoptotic genes Bcl2l1 and Mcl1 and oncogenic miRNAs miR21 and miR27a decreased due to DCA treatment. Our results confirmed that DCA, as a glycolysis inhibitor, leads to apoptosis induction in TNBC cells because of reducing expression of viability genes and miRNAs.
Elmira Shokoohi, Omid Sofalian, Ali Asghari, Saeid Khomari, Behrooz Esmaielpour, Hamed Aflatooni,
Volume 10, Issue 2 (9-2023)
Abstract
Chickpea is one of the most important plants of the legume family and is very important in the diet. In order to investigate the genetic diversity of chickpea, an experiment was conducted with 18 chickpea genotypes in the form of a completely to investigate the genetic diversity of chickpea, an experiment was conducted with 18 chickpea genotypes in the form of a completely randomized block design. After acclimatization of plants to cold, freezing treatment was applied at temperatures of -6, -8 and -10 and their 50% lethality temperature (LT50) was determined by probit transformation. Before and after the habituation stage, a leaf sample was taken and the relative content of leaf water, photosynthetic pigments, proline, soluble sugar, protein percentage, catalase, peroxidase, polyphenol oxidase and greenness index were measured. Genotype number 5 with the lowest LT50 (-8.86) and the highest survival percentage (80%) was the most resistant genotype and genotype 10 with the highest LT50 (-3.57) and the lowest survival percentage along with genotype 15 were recognized as the most sensitive genotypes. In order to evaluate genetic diversity, DNA extraction was utilized and 21 different ISSR primers were used in the investigation. The results showed the presence of polymorphism among the cultivars studied. A total of 101 clear bands were produced, of which 94 were polymorphic bands. Polymorphic information content (PIC) was in the range of 0.332 (initiator 7) to 0.049 (initiator 16). The amount of gene diversity was between 0.126 and 0.977 changes. Cluster analysis of genotypes was done using Jaccard similarity coefficient and UPGMA method