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Phenolic compounds, especially those with plant origin, constitute an essential part of the human diet due to their antioxidant properties. Antioxidants protect biological systems (nucleic acids, proteins, lipids, lipoproteins) against free radicals and reactive oxygen species. Some medicinal plants contain so high amounts of antioxidants that their use can be considerably effective for human health. The aim of this study was to evaluate the effect of flooding extraction method on phenolic compounds, flavonoids and the level of free radical scavenging properties of medicinal plants including Thyme, Hamadani Yarrow, Shirazi mountain thyme, Yarrow, Chamomile, Saffron corm hyssop Sagebrush, wormwood, Artemisia and Ziziphora clinopodioiedes, in four extraction solvents including water, methanol, acetone and ethanol. The results showed that methanol and water solvents had the highest and the lowest total phenolic, flavonoid and antioxidant activity, respectively. The results also showed that methanol extraction of Shirazi thyme and water extraction of Wormwood plant had the highest and the lowest phenol and flavonoids contents, respectively. The results of trapping the free radicals of DPPH indicated that the methanol extract of Shirazi thyme and aqueous extract of wormwood had the highest and the lowest inhibition activities, respectively. Therefore, the selection of solvent type can affect the rate of the extraction of phenolic compounds, flavonoids and antioxidant activity.
 

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In order to investigate different treatment effects on germination in Gundelia tournefortii, three factorial experiments were carried out in the completely randomized design with three replications. The first factor was stratification at 4^oC in three levels including 0, 3 and 6 weeks, the second factor was mechanical scarification in two levels including seeds with/without scarification and the third factor was chemical treatments of seed dormancy breaking in three levels including distilled water and gibberellic acid at concentrations of 1000 and 1500 mg/l and Thiourea 0.1%. The results showed that the effects of stratification, scarification and chemical treatments of dormancy breaking and their interactions were significant on all studied parameters (p<0.01). Mean comparison values were significant for the effects of spate treatments together with mechanical scarification for the improvement of all traits. The results also revealed that treatment of mechanical scarification treatment together with gibberellic acid 1000 mg/l in six weeks stratification, due to maximum germination speed, seedling dry weight, seedling length, large-scale germination percentage and seedling vigor index and modest average germination period, was the most influential treatment for seed dormancy breaking of this plant. Correlation between germination percentage with germination rate, dry weight and seedling length was significant. It seems that seed dormancy type in Gundelia tournefortii is physiological and physical, as eliminating physiological and physical factors leads to its germination improvement.
 

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Abstract. Eurasian Nuthatch (Sitta europaea), with 18 subspecies, has a wide distribution in deciduous forests of Eurasia. The subspecies S.e.persica is a resident bird in the Zagros Mountains, from north-west to south-west of Iran. The aim of this study was to evaluate the taxonomic and phylogenetic relationships of this subspecies to European, Asian, as well as Caucasian clades. For this purpose, 10 individuals of two populations from Zagros forests in Kermansha and Kohgiluyeh and Boyer-Ahmad provinces were captured and blood samples were collected. Furthermore, we used ND2 sequence data (1041 bp) for 136 sequnces from GenBank. were used from Then genetic variations and Genealogical analysis was calculated using complete ND2 gene sequence (1041bp) and TRN+G model, Bayesian trees and maximum likelihood, respectively. Also, median joining algorithm showed the relationships among haplotypes. We found four new haplotypes for the Zagros populations. Our phylogenetic analysis revealed that the genetic distance between Zagros population and Caucasian clade was significantly small, demonstrating Zagros populations are part of the Caucasian clade. F_ST statistical values, resulted from Analysis of Molecular Variance (AMOVA), represented significant variations in genetic structure among Eurasian Nuthatch populations. Moreover, F_CT revealed significant variation among European, Asian, and Caucasian clades. Overall our result suggests that Eurasian Nuthatch populations in Eurasia comprise three phylogenetic species, and likely biological species. Hoewever, the previous nomenclatured subspecies, S.e.caucasian and S.e.persica, can be considered as a common phylogenetic species.

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Astragalus semnanensis Bornm. & Rech. belongs to sect. Semnanensis, of thorny astragali and A. fridae, of non-thorny astragali, belongs to sect. Incani are the only endemic gypsophyllic species in western Semnan. The morphological and systematical studies available on these two species are scarce. Nor have the anatomical, distribution and adaptive capabilities in relation to soil and elevation of these species been investigated yet. Therefore, this study is aimed to comparatively investigate these features. The effect of soil and elevation on the anatomy, morphology and micro-morphology of the leaves of both species, as well as associated plant species, were analyzed using RDA and CCA analytical methods, Canoco 4.5 software. Comparison of RDA analysis of both species indicated that gypsum had the highest effect on the abundance of both species, while elevation had a strongly positive correlation with A. fridae and a negative correlation with A. semnanensis. Both species adsorb gypsum on their epidermis and part of the gypsum absorbed is accumulated in leaf parenchyma cells as calcium sulfate crystals. Adaptability of leaf surface is in the form of long and dense hairs which, in A. semnanensis, are longer and basifixed and, in A. fridae, thicker and medifixed. Increase in soil Ec and Na, K and Mg content and content of CaCO₃ reduce both species abundances. Species such as Acantholimon cymosum and Prunus lycioides were found to be associated with A. semnanensis and species such as Moltkia gypsaceae and Euphorbia gypsicola with A. fridae.
 

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The present study aimed to increase the seed germination and the initial performance of pistachio seeds by investigating the effects of the magnetic field and osmopriming treatments simultaneously. 10 treatment levels of 10, 20 and 30 mT for 5, 15, 25 minutes and 1 control treatment (without exposure to a magnetic field) were performed in three replicates and the best level of magnetic surface was selected. The results showed that seeds subjected to the magnetic field showed an increase in plumule length, radicle length, total length of seedlings, fresh and dry weight of plumule as well as radicle and germination speed compared with the control treatment. However, there was no significant difference in the germination percentage and uniformity of seeds. Magnetized seeds, with the superior selective treatment (10 mT for 15 minutes), were primed with solutions of potassium nitrate, humic acid and salicylic acid at levels of 10, 25 and 40 mM and a control level (the best level of magnetism) in three replicates. The best result was obtained from humic acid (25 mM). With regard to the low cost of the purchase or construction of magnetic devices and their positive effects, their application could be recommended (10 mT for 15 minutes) combined with the humic acid (25 mM)) so that the quality of pistachio seedlings production would be increased.
 

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Fire affects vegetation and changes plant succession. In this paper, the vegetation of Sirachal Research Station, which burned in the summer of 2014, was studied and compared with the unburnt areas, based on biodiversity indices. The research was implemented as a factorial experiment in a completely randomized design. First, on the basis of physiognomy, the area was divided into three parts: shrubland, shrubland-rangeland, and rangeland. Each part was, then, divided into two sections, including a burnt area and an adjacent unburnt area (control area). In each area (burnt and unburnt), three sampling units were randomly assigned using PNP method, and vegetation measurements were subsequently performed. Based on data analysis, a total of 141 taxa were identified, belonging to 28 families and 95 genera, including one species of Gymnosperm, 19 monocotyledons and 121 dicotyledons in two burnt and unburnt areas of Sirachal Station. Based on the statistical analysis, using Past3 and SPSS softwares, there was no significant difference in the number of taxa between the vegetation of the burnt and unburnt areas. Of the indicators analyzed in Past3, the number of individual, the index of Menhinick's richness and the Shannon diversity index were significantly different in the treatments sampled from the burnt and unburnt areas. According to the Duncan test average, the number of individuals in the unburnt area, with a canopy cover below 25%, was greater than that in the burnt area, with the same canopy cover, however, no significant difference was observed between the individuals in the burnt area and unburnt area, with the same canopy cover of more than 25%. Also, the richness of the burnt area with a canopy of less than 5% is significantly higher than that in the unburnt area with the same canopy cover.
 
 
 

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Gentamicin (GM) is an antibiotic widely used against gram-negative infections. However, its clinical application is limited due to its nephrotoxicity. Oxidative stress plays an important role in the nephrotoxicity of gentamicin. Previous studies showed that Rosa canina L. (RC) fruits possess antioxidant, antimutagenic and anticarcinogenic effect. The aim of this study was to investigate the protective effect of RC on GM-induced nephrotoxicity in rats. Thirty male Wistar rats were divided into five groups and treated as follows: Group 1 (control group) was treated by the oral administration of 1 ml normal saline, Group 2 was treated by a 100 mg/Kg (B.W) dose of GM intraperitoneally, Group 3 was treated by oral administration of 200 mg/Kg (B.W) of RC followed by a 100 mg/Kg (B.W) dose of GM intraperitoneally, Group 4 was treated by oral administration of 400 mg/Kg (B.W) RC followed by a 100 mg/Kg (B.W) of GM intraperitoneally, and Group 5 was treated by oral administration of 400 mg/Kg (B.W) of RC. The nephrotoxicity observed in each group was histopathologically evaluated by light microscopy and biochemically evaluated by measuring the levels of creatinine and urea in the blood serum. The relative weight of kidney in each gentamicin-treated animals in the group 2 was increased in comparison with those in the control group (p<0.05), however, the administration of RC extract decreased the kidney somatic index toward the normal level. While the animals treated with gentamicin showed significantly higher levels of serum urea and creatinine (p<0.001), simultaneous coadministration of GM with a high dose of RC (400 mg/Kg (B.W) ameliorated the biochemical indices of nephrotoxicity, showing the significant decrease in the levels of serum creatinine and urea. In addition, Histomorphological examination showed that the rats treated with GM suffered necrosis and desquamation of tubular epithelial cells, glomerular stasis and inflammatory cell infiltration in renal cortex, while simultaneous administration of RC and GM reduced those histologically damages. It could be concluded that the administration of RC showed a protective effect on the rat kidney by preventing renal damages induced by GM, therefore, the RC-based supplements could be proposed to minimize the GM-induced renal damages.
 

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The aim of this study was to determine the variations among cephalic plates of individuals in two populations of Clinopodes flavidus in Alborz Mountains, by means of landmark-based techniques of geometric morphometrics. Therefore, 17 landmarks and semi-landmarks on the coxosternite of poison claw and seven landmarks and semi-landmarks on the tarsangulum of poison claw were selected using TpsDig2 software. Data of landmarks, after procrust analysis, were subjected to various multivariate analyses, such as Principle Component Analysis (PCA) and Canonical Variate Analysis (CVA) by means of PAST and MorphoJ softwares. The results obtained demonstrated that shape variations in coxosternite were significantly different among various populations (p<0.001). This study revealed the usefulness of landmark-based geometric morphometrics in the differentiation of various populations of Clinopodes flavidus in Alborz Mountains.

 
 

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Phelipanche pouyanii is described here as a new species from South Khorassan Province, East of Iran. Its diagnostic morphological features are the calyx teeth being far longer than the calyx tube and staminal filaments being glabrous. These characters clearly differentiated the new species from its closely related taxa, i.e., P. mutelii, P. angustelaciniata and P. nana. Results obtained from the pollen and seed micromorphological characters showed no significant taxonomic value in the delimitation of the new species from its closely related species. The internal transcribed spacer (ITS) sequences, however, showed sufficient differences to delineate the new species from its closely related species.
 

 

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The pomegranate fruit is one of the most important horticultural products due to the presence of polyphenolic, antioxidant and anti-fungal compounds. In the present study, morphological and phytochemical compounds diversity was investigated in eight Iranian commercial pomegranate cultivars. Fourteen morphological characters and 10 chemical compounds were measured. Based on PCA analysis the most variable morphological characteristics among Punica cultivars studied were the wood surface, the leaf tip, the leaf incision, growth power and rained condition. High-performance liquid chromatograms of chlorgenic acid, caffeic acid, Para Coumaric acid as well as titrable acidity, total soluble solid, total phenolic contents, antioxidant activity in juice and peel of cultivars differentiated the cultivars studied. Comparing the two UPGMA dendrograms of Punica cultivars based on morphological data and chemical contents indicated certain disagreement between them. The correlation between morphological and chemical compounds and geographical distances of Punica cultivars was not statistically significant by the Mantel test. These findings indicate that Punica cultivars studied differ in their genetic content, however, this genetic difference is not correlated with their geographical distance.
 
 

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Tamarix is the largest genus in the family Tamaricaceae with about 54 species. T. tetragyna var. meyeri and T. tetragyna var. deserti were previously reported from Iran. Due to the presence of overlapping features in the previously designed identification keys for the separation of these two varieties, it could be helpful to use other characters and character states derived from other sources, such as anatomical and molecular studies, in addition to find more effective morphological features for the separation of the two varieties. Therefore, the present study aimed to differentiate these two presumed varieties by multiple approaches using morphological, anatomical and molecular data. For morphological study, 6 quantitative and qualitative characters were examined in 12 samples of the two varieties. ANOVA analysis showed a significant difference between the studied characters. For anatomical study, 10 traits were examined in 4 samples of the two varieties, which also showed a significant difference. AMOVA analysis based on molecular studies using Scot marker showed a significant difference between the two varieties. The PCA biplot show the most variable traits in morphological and anatomical studies. For varieties delimitation, different clustering methods were drawn in all three studies. The results of this study showed that the use of appropriate diagnostic traits in morphological and anatomical studies as well as the use of molecular markers can be effective in showing the separated boundaries of the two varieties studied.
 

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Human serum albumin is one of the most important blood proteins that has the ability to bind a wide range of compounds and different drugs. Hence, knowing how drugs bind to albumin is crucial to understand their pharmacokinetics and pharmacodynamic properties. The binding of drugs to protein affects the drug's excretion, distribution and interaction in the target tissues. Nicotinamide (NA) is a safe and inexpensive medical supplement that used to prevent and treat vitamin B3 deficiency. In this research, the molecular mechanism of the interaction between nicotinamide and human serum albumin was studied by the utilization of spectroscopic and molecular docking methods. The effects of temperature, acidic/basic pHs, metal ions, urea, and glucose on the interaction between nicotinamide and human serum albumin were also investigated. The spectroscopic studies indicated that the interaction between nicotinamide and human serum albumin is mainly controled by hydrophobic forces and the interaction is spontaneous. The number of binding site and binding constant is 1 and 4.6×10⁴ (L/mol), respectively, which were increased in the presence of glucose. The presence of metallic ions and basic pH decreased the binding constant of nicotinamide to albumin. The obtained results indicated that nicotinamide tend to binds to the similar sites wherever the molecules with acidic moieties bind. The results could be helpful to interpret the mechanisms of actions of nicotinamide in the various physiological phenomena in the human body.

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The genus Ulva L. (Sea lettuce), one of the most valuable marine macroalgae, is found in shallow coastal areas and in brackish and fresh water around the world. Ulva species have nutritional and medicinal values in addition to other applications, and contain various compounds such as lipids, proteins and carotenoids. These species have high phenotypic plasticity and varied in response to different environmental conditions. In this study, 38 populations of 10 species of Ulva from the coastal areas of the Persian Gulf and Oman Sea, from different areas of Bushehr, Hormozgan and Sistan and Baluchestan provinces, were studied and identified on the basis of morphological and anatomical traits. Different populations showed variations in characteristics such as height, shape and color of thallus, number of pyrenoids and cell dimensions. Metabolites such as total protein, total oil, chlorophyll a, b and carotenoids contents were measured and compared among the different populations. The results should that the percentage of protein was highest in U. prolifera of Shif Island from Bushehr province as compared with the Ulva species studied, with about 26.5% of dry weight, and the percentage of total oil was lowest in U. flexuosa of Hakhamanesh region from Hormozgan province as compared with the species studied, with about 4.8% of dry weight. These results show that different environmental conditions affect the morphological and anatomical structure of species and the content of their metabolites. Due to the high-protein and low-calorie content of the Ulva genus and the importance of finding new and sustainable resources for food and pharmaceutical industries, the species of this genus have valuable potentials.
 

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Selenium, a non-essential element for plants, is essential for animals as well as human beings. Although the role of selenium in plants is yet to be properly understood, previous researches have shown that this element can affect plant growth and metabolism. In this study, the effect of foliar application of selenium nanoparticles (0, 5, 10, and 20 mg/L) and sodium selenate (0, 5, 10, and 20 mg/L) on the physiological and biochemical responses of bell pepper (Capsicum anumm L.) was investigated. The potential changes in various growth and biochemical indices were evaluated in response to the treatments. According to the results, selenium treatments at concentrations of 10 and 20 mg/L reduced the biomass accumulation in both roots and shoots. These treatments also increased the content of hydrogen peroxide and malondialdehyde. The foliar application of selenium led to the increase of the concentrations of soluble phenols, proline and thiols. The activity of antioxidant enzymes including catalase, peroxidase, ascorbate peroxidase, and polyphenol oxidase were increased in response to the selenium treatments. The protease activity displayed a similar upward trend following the selenium treatments.

 

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Urmia Lake is the largest lake in the Iranian plateau and the second largest Salt Lake in the world. This study was conducted to identify hypersaline bacteria in the lake through the screening with molecular markers. For the molecular study of the bacterial microbiome of the lake, samples were collected from water, sludge and soil of the different parts of the lake during different seasons of 2018 and 2019, and then transferred to the laboratory under standard conditions. Bacterial isolates were purified from the samples using universal culture media. ERIC molecular marker was used to study the species diversity. After clustering analysis of the species on the basis of their genetic markers, one bacterium from each cluster was selected as the representative of each cluster and then identified by DNA barcoding method using the 16srDNA. Biochemical tests were performed to confirm the molecular results. In total, 102 bacterial isolates were isolated and purified from the samples, of which only 29 isolates were extremely-halophilic. The molecular diversity of isolates, based on ERIC molecular marker, showed that isolates can be assigned to five different clusters. Five isolates selected from each cluster were selected and their 16SrDNA region were amplified and sequenced with 16SrDNA-specific primers. The results showed that the five selected isolates with 99% similarity belonged to the species Microbulbifer halophilus, Halomonas salina, Bacillus sonorensis, Salinivibrio costicola and Bacillus aquimaris. The results of molecular identification were consistent with the results of biochemical tests.
 
 

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The new species Onosma nuristanica is described and illustrated here on the basis of specimens collected from Parun in Nuristan and Chapa Dareh in Kunar, one of the eastern provinces of Afghanistan. An extensive review of the literature and a comparative study with specimens from several herbaria led to the determine of this new species. Our results represent significant divergence between studied specimens in terms of the most important morphological features, i.e., flower color, pedicel length, bract length filaments length, cauline shape and form.  In this article, a detailed description of the new species and a diagnostic key for Onosma species thriving in Afghanistan are provided and the new species is compared morphologically with its closely related species. In addition, a distribution map is provided for the new species and its close relatives in the area.

 

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It has been found that the second isoform of COX enzyme known as COX-2 plays an important role in inflammation and rheumatoid arthritis and osteoarthritis. Thus, designing COX-2 inhibitors to treat inflammation is among the most important goals of researchers. In this study, the inhibitory effect of 3 new imidazole derivatives on COX-2 was evaluated by in silico approach. Molecular docking was done using Autodock Vina and the best binding mode of inhibitors was used as input of molecular dynamics (MD) simulation. MD was performed using Gromacs software for 120 ns. Then, structural and thermodynamic analyzes (ΔG_binding) and prediction of physicochemical properties were performed. RMSD data showed the compounds reached a good equilibrium and had favorable stability during simulation. Also, the RMSF showed that due to binding of inhibitors, the fluctuations of complexes decreased and the active site residues had the lowest amount. Rg, SASA and DSSP analysis showed that the protein structure did not change significantly. It was also found that Ser530 and Tyr355 residues play a more effective role in hydrogen bond formation. Physicochemical parameters determined the good drug-likeness properties for all compounds. Structural and thermodynamic analyzes (MM-PBSA) and IC₅₀ data indicate the favorable inhibitory effect of compound 5b.